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Anaerobic digestion of sludge by different pretreatments: Changes of amino acids and microbial community

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 2, doi: 10.1007/s11783-021-1458-7

Abstract:

•Tryptophan protein, and aromatic protein I/II were the key identified proteins.

Keywords： Sludge pretreatments     Dissolved organic nitrogen     Proteins     Amino acids     Structural equation model     Metagenomicsequencing analysis.    

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Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 1,   Pages 4-4 doi: 10.1007/s11783-021-1438-y

Abstract:

Microplastics existing widely in different matrices have been regarded as a reservoir for emerging contaminants. Mariculture systems have been observed to host microplastics and antibiotic resistance genes (ARGs). However, more information on proliferation of ARGs and metal resistance genes (MRGs) in mariculture system at the presence of microplastics is needed.

Keywords： Antibiotic resistance genes     Metal resistance genes     Metagenomic analysis     Microplastics     Mariculture    

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Plastic materials and water sources actively select and shape wastewater plastispheres over time

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 11, doi: 10.1007/s11783-022-1580-1

Abstract:

● Wastewater MPs exhibited resistomes and therefore health threats.

Keywords： Microplastics     Whole-genome metagenomic sequencing     Plastisphere     Plastic degradation     MHETase    

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Insights from metagenomic, metatranscriptomic, and molecular ecological network analyses into the effects

Quan Zheng, Minglu Zhang, Tingting Zhang, Xinhui Li, Minghan Zhu, Xiaohui Wang

Frontiers of Environmental Science & Engineering 2020, Volume 14, Issue 4, doi: 10.1007/s11783-020-1239-8

Abstract: Furthermore, metagenomic and metatranscriptomic analysis revealed that most of the genera related toLastly, MENs analysis showed that although the overall network became smaller and looser in the presence

Keywords： Chromium nanoparticles (Cr NPs)     Metagenomic analysis     Metatranscriptomic analysis     Molecular ecological    

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Genome-resolved metagenomic analysis reveals different functional potentials of multiple Brocadia species

Frontiers of Environmental Science & Engineering 2023, Volume 17, Issue 1, doi: 10.1007/s11783-023-1602-7

Abstract:

● Four Ca. Brocadia species were observed during the spontaneously enrichment.

Keywords： Anammox     Candidatus Brocadia     Functional potential     Cooccurring mechanisms     Swine wastewater treatment facilities    

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Comparative analysis of impact of human occupancy on indoor microbiomes

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 5, doi: 10.1007/s11783-020-1383-1

Abstract:

• Exposure to indoor microbiomes is a public health concern in educational facilities.

Keywords： Built environment     Indoor microbiome     Occupant     Building     Sequencing    

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Analysis of the genomic landscape of primary central nervous system lymphoma using whole-genome sequencing

Frontiers of Medicine   Pages 889-906 doi: 10.1007/s11684-023-0994-x

Abstract: Whole-genome sequencing was performed on 68 newly diagnosed Chinese PCNSL samples, whose genomic characteristics

Keywords： primary central nervous system lymphoma     whole-genome sequencing     TMSB4X     copy number variation    

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Identification of cancer gene fusions based on advanced analysis of the human genome or transcriptome

Lu Wang

Frontiers of Medicine 2013, Volume 7, Issue 3,   Pages 280-289 doi: 10.1007/s11684-013-0265-3

Abstract: Accompanied by a powerful computational data analysis method, new genome-wide screening approaches werescreening approaches in fusion gene identification, such as microarray-based approaches, next-generation sequencing

Keywords： gene fusion     cancer     microarray     next-generation sequencing     NanoString nCounter system    

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Application of machine learning technique for predicting and evaluating chloride ingress in concrete

Van Quan TRAN; Van Loi GIAP; Dinh Phien VU; Riya Catherine GEORGE; Lanh Si HO

Frontiers of Structural and Civil Engineering 2022, Volume 16, Issue 9,   Pages 1153-1169 doi: 10.1007/s11709-022-0830-4

Abstract: Based on the results of sensitivity analysis using SHapley Additive exPlanation (SHAP) and partial dependence

Keywords： gradient boosting     random forest     chloride content     concrete     sensitivity analysis.    

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A chemometric analysis on the fluorescent dissolved organic matter in a full-scale sequencing batch reactor

Chen Qian, Wei Chen, Wei-Hua Li, Han-Qing Yu

Frontiers of Environmental Science & Engineering 2017, Volume 11, Issue 4, doi: 10.1007/s11783-017-0962-2

Abstract: Fluorescence excitation-emission matrix (EEM) in combination with parallel factor analysis (PARAFAC)However, a recent work has revealed the drawback of PARAFAC analysis, i.e., overestimating the componentA novel method, parallel factor framework-clustering analysis (PFFCA), has been developed in our earlier

Keywords： WWTPs)     Excitation-emission matrix (EEM)     Parallel factor (PARAFAC)     Parallel factor framework-clustering analysis    

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Exome sequencing greatly expedites the progressive research of Mendelian diseases

Xuejun Zhang

Frontiers of Medicine 2014, Volume 8, Issue 1,   Pages 42-57 doi: 10.1007/s11684-014-0303-9

Abstract:

The advent of whole-exome sequencing (WES) has facilitated the discovery of rare structure and functionalCombining exome sequencing with linkage studies is one of the most efficient strategies in searchingWe illustrate the workflow of exome capture and sequencing to highlight the advantages of WES.

Keywords： genetics     whole-exome sequencing     Mendelian disease     disease gene    

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Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

Frontiers of Medicine 2022, Volume 16, Issue 2,   Pages 240-250 doi: 10.1007/s11684-021-0909-7

Abstract: , we profiled 3′-terminal 2′-O-methyl plant miRNAs in the livers of rice-fed mice by oxidative deep sequencing

Keywords： small RNAs     2′-O-methylation     sequencing     RT-qPCR    

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TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

Daniel Wai-Hung Ho,Alan Ka-Lun Kai,Irene Oi-Lin Ng

Frontiers of Medicine 2015, Volume 9, Issue 3,   Pages 322-330 doi: 10.1007/s11684-015-0408-9

Abstract:

This study systematically evaluates the TCGA whole-transcriptome sequencing data of hepatocellularBased on the differential gene expression analysis, we identified a number of novel dysregulated genesmechanistic overview by subjecting significantly upregulated and downregulated genes to gene set enrichment analysis

Keywords： TCGA     whole-transcriptome sequencing     HCC     liver cancer    

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Exploring the cancer genome in the era of next-generation sequencing

Hui Dong, Shengyue Wang

Frontiers of Medicine 2012, Volume 6, Issue 1,   Pages 48-55 doi: 10.1007/s11684-012-0182-x

Abstract:

The emergence of next-generation sequencing technologies has led to dramatic advances in cancer genomeThe increased efficiency and resolution of next-generation sequencing greatly facilitate the detectionComprehensive analysis of cancer genomes through approaches of whole genome, exome, and transcriptomesequencing has significantly improved the understanding of cancer biology, diagnosis, and therapy.The present study briefly reviews the recent pioneering studies on cancer genome sequencing and provides

Keywords： next-generation sequencing     cancer genome     whole genome sequencing     exome     transcriptome    

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Comparative study on microbial community in intermittently aerated sequencing batch reactors (SBR) and

Xiaolin Sheng, Rui Liu, Xiaoyan Song, Lujun Chen, Kawagishi Tomoki

Frontiers of Environmental Science & Engineering 2017, Volume 11, Issue 3, doi: 10.1007/s11783-017-0929-3

Abstract: A traditional sequencing batch reactor (SBR) and two intermittently aerated sequencing batch reactors

Keywords： wastewater     Intermittent aeration     Microbial community     Partial nitrification–denitrification process     Sequencing    

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Title Author Date Type Operation

Anaerobic digestion of sludge by different pretreatments: Changes of amino acids and microbial community

Journal Article

Metagenomic analysis on resistance genes in water and microplastics from a mariculture system

Journal Article

Plastic materials and water sources actively select and shape wastewater plastispheres over time

Journal Article

Insights from metagenomic, metatranscriptomic, and molecular ecological network analyses into the effects

Quan Zheng, Minglu Zhang, Tingting Zhang, Xinhui Li, Minghan Zhu, Xiaohui Wang

Journal Article

Genome-resolved metagenomic analysis reveals different functional potentials of multiple Brocadia species

Journal Article

Comparative analysis of impact of human occupancy on indoor microbiomes

Journal Article

Analysis of the genomic landscape of primary central nervous system lymphoma using whole-genome sequencing

Journal Article

Identification of cancer gene fusions based on advanced analysis of the human genome or transcriptome

Lu Wang

Journal Article

Application of machine learning technique for predicting and evaluating chloride ingress in concrete

Van Quan TRAN; Van Loi GIAP; Dinh Phien VU; Riya Catherine GEORGE; Lanh Si HO

Journal Article

A chemometric analysis on the fluorescent dissolved organic matter in a full-scale sequencing batch reactor

Chen Qian, Wei Chen, Wei-Hua Li, Han-Qing Yu

Journal Article

Exome sequencing greatly expedites the progressive research of Mendelian diseases

Xuejun Zhang

Journal Article

Accurate quantification of 3′-terminal 2′-O-methylated small RNAs by utilizing oxidative deep sequencing

Journal Article

TCGA whole-transcriptome sequencing data reveals significantly dysregulated genes and signaling pathways

Daniel Wai-Hung Ho,Alan Ka-Lun Kai,Irene Oi-Lin Ng

Journal Article

Exploring the cancer genome in the era of next-generation sequencing

Hui Dong, Shengyue Wang

Journal Article

Comparative study on microbial community in intermittently aerated sequencing batch reactors (SBR) and

Xiaolin Sheng, Rui Liu, Xiaoyan Song, Lujun Chen, Kawagishi Tomoki

Journal Article